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SRX028229: Genome sequencing of Microbotryum violaceum (anther smut) isolate p1A1 Lamole
2 LS454 (454 GS FLX Titanium) runs: 549,949 spots, 295.5M bases, 649.6Mb downloads

UUID: dd01c787-d191-4300-a75b-b21fc5a051f0
Design: low 3kb jumping coverage on 454
Submitted by: Broad Institute (BI)
Study: Microbotryum lychnidis-dioicae p1A1 Lamole Genome sequencing and assembly
show Abstracthide Abstract
Genomic DNA from Mike Perlin at the University of Louisville, Kentucky. Though not directly an agricultural pest group, the <i>Microbotryum violaceum</i> complex, or anther smuts, is an exciting system for examination of the ecology and evolution of host/pathogen interactions in "wild" non-agricultural environments where host heterogeneity provides an important contrast to the heavily studied agricultural pathogens. <i>M. violaceum</i> also serves as a model for emerging infectious disease through host shifts, for studying the evolution of sexual systems and sex chromosomes, and for examining gene expression that may give clues to important genes involved in pathogenicity during infections.
Sample: Generic sample from Microbotryum violaceum p1A1 Lamole
SAMN00013358 • SRS025195 • All experiments • All runs
Library:
Name: 454-5301
Instrument: 454 GS FLX Titanium
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
          barcode
Group tagBasecalls
BratislavaACCGGAAGC
14  forward           reverse

Experiment attributes: (show all 6 attributes...) (hide...)
analysis_type: Standard 454 Base Calling and Alignment
gssr_id: 46515.4
lsid: BROAD:SEQUENCING_SAMPLE:46515.4
material_type: Genomic DNA
project: G2496
work_request: 23130
Pipeline: show...hide...
NameStepProgramVersion
base caller2010-09-25 11:22:27.0454BaseCaller2.3
Runs: 2 runs, 549,949 spots, 295.5M bases, 649.6Mb
Run# of Spots# of BasesSizePublished
SRR06861739,45021.3M46.9Mb2010-10-14
SRR068618510,499274.1M602.7Mb2010-10-14

ID:
34090

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